转录组和代谢组分析盐度对盐单胞菌合成羟基四氢嘧啶的影响

TRANSCRIPTOMICS AND METABOLOMICS ANALYSIS OF SALINITY ON SYNTHESIS OF HYDROXYECTOINE IN HALOMONAS

  • 摘要: 为了明确不同盐度对Halomonas campaniensis XH26合成羟基四氢嘧啶(5-hydroxyectoine, 5-HE)代谢通路和基础代谢的影响, 研究采用无 NaCl作为对照组, 以12%、14%和16% NaCl浓度梯度作为高盐组。利用转录组测序和液质联用技术(LC-MS)分析了H. campaniensis XH26在不同NaCl浓度条件下的差异表达基因和差异代谢物, 并利用qPCR对与Ectoine和5-HE合成密切相关的差异基因的表达量进行了相对定量分析验证。结果显示, 5-HE合成量在高盐组间随盐梯度先增加后降低, 并在14% NaCl浓度时达到最高。转录组结果显示, 在186个KEGG代谢通路中, 差异表达基因在ABC转运蛋白、双组分系统、鞭毛组装等通路中高度富集。筛选到与5-HE合成代谢相关的7个关键基因表达存在差异, 包括lysCectAectBectCectDdoeCdoeD。qPCR验证结果与转录组学分析结果基本一致。代谢组分析共发现了1159个差异代谢物, 主要富集在氨基酸代谢、辅因子-维生素代谢和碳水化合物等代谢通路。研究还筛选出了显著差异的相容性溶质, 包括四氢嘧啶、羟基四氢嘧啶和甜菜碱。研究分析了菌株H. campaniensis XH26的耐盐特性及盐适应机制, 初步明确了5-HE产量及合成基因簇表达随盐度变化的规律, 为高产5-HE的野生菌的优化和基因工程菌的构建提供了理论基础。

     

    Abstract: Hydroxyectoine, a remarkable compatible solute renowned for its effective regulation intra- and extracellular osmotic pressure, undergoes stringent regulation in Halophilic bacteria due to its status as an ectoine derivative. Halomonas campaniensis XH26 produces hydroxyectoine when cultured in a medium containing 3% NaCl. This study aims to elucidate the pathways and key factors influencing hydroxyectoine synthesis in H. campaniensis XH26. Utilizing a control group with 0 NaCl and experimental groups with NaCl gradients of 12%, 14% and 16%, we analyzed differentially expressed genes and metabolites across four varying NaCl salinity culture conditions. These analyses were conducted through transcriptomic sequencing and metabolomic profiling using Liquid Chromatograph-Mass Spectrometer (LC-MS). Furthermore, differential gene expression was confirmed through relative quantitative analysis via qPCR. The results showed that the amount of 5-HE synthesis increased and then decreased with the salt gradient and was the highest at 14% NaCl. Transcriptomic analysis identified 186 KEGG metabolic pathways, notably enriched in ABC transporter proteins, the two-component system, and flagellar assembly pathways. Seven key genes implicated in hydroxyectoine biosynthesis-lysC, ectA, ectB, ectC, ectD, doeC, and doeD-exhibited differential expression. Comparative analysis demonstrated that the qPCR validation results were largely consistent with the transcriptomics findings. LC-MS analysis led to the identification of 1159 differential metabolites, among which the compatible solutes ectoine, hydroxyectoine, and betaine showed significant variations. Notably, differences in metabolites were observed in amino acid metabolism, cofactor-vitamin metabolism, and carbohydrate metabolic pathways. In this study, we analyzed the salt tolerance characteristics and salt adaptation mechanism of H. campaniensis XH26. These results preliminarily clarified the patterns of 5-HE production and synthetic gene cluster expression with salinity. In addition, they also provide a theoretical basis for the optimization of wild bacteria with high 5-HE production and the construction of genetically engineered bacteria.

     

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